Genomics/Transcriptomics/Bioinformatics            Neuroanatomy             Songbird: General           



Avian Brain Nomenclature: Provides background and information on the revised avian brain nomenclature (

The Zebra Finch Brain AtlasAn online set of high resolution histological images of the zebra finch brain (Nissl and Myelin stains; 3 planes, as described in Karten et al., 2013).

MRI Atlas of the zebra finch brainMRI atlas of the zebra finch brain (Van der Linden Lab).




The Allen Mouse Brain AtlasGenome-wide, high-resolution atlas of gene expression throughout the adult mouse brain. is an interactive multiresolution next-generation brain atlas that is based on over 20 million megapixels of sub-micron resolution, annotated, scanned images of serial sections of both primate and non-primate brains and that is integrated with a high-speed database for querying and retrieving data about brain structure and function over the internet.

Mouse ConnectomeThe Mouse Connectome Project (MCP) aims to create a three-dimensional digital connectome atlas of the C57Black/6J mouse brain.

Mouse Brain Architecture is a work in progress, an evolving portal that will provide interactive tools and resources to allow researchers, clinicians, and students to discover, analyze, and visualize what is known about the brain’s organization, and what the evidence is for that knowledge.


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